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SRX105393: Whole Genome Sequencing
2 ILLUMINA (Illumina HiSeq 2000) runs: 11.2M spots, 2.1G bases, 1.4Gb downloads

UUID: b4490f0b-05b1-4676-b7fa-b41395c3fc91
Design: Illumina sequencing of Plasmodium falciparum SenT151.09 via random selection
Submitted by: Broad Institute (BI)
Study: Plasmodium falciparum Multi-isolate project for SNP discovery
PRJNA51255 • SRP003502 • All experiments • All runs
show Abstracthide Abstract
We are sequencing 25 strains of Plasmodium falciparum. They will be indexed and pooled: 101 bp PE reads; 35X coverage for SNP discovery. We will be submitting traces and SNP calls.
Sample: Generic sample from Plasmodium falciparum SenT151.09
SAMN00103513 • SRS107428 • All experiments • All runs
Organism: Plasmodium falciparum SenT151.09
Library:
Name: Pond-81786
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
1  forward barcode
Group tagBasecalls
AAGACACT
110  reverse

Experiment attributes: (show all 9 attributes...) (hide...)
analysis_type: AssemblyWithReference
gssr_id: 114749.0
library_type: WholeGenomeShotgun
lsid: broadinstitute.org:bsp.prod.sample:24GBX
material_type: DNA:DNA Somatic
project: G14425
root_sample_id: SM-21KXC
sample_id: SM-24GBX
work_request: 25945
Pipeline: show...hide...
NameStepProgramVersionNotes
base caller2011-09-08 10:00:38.0GAPipelineRTA1.12.4.2Sequencer Application 1.4.8
Runs: 2 runs, 11.2M spots, 2.1G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR3641405,731,6411.1G722.9Mb2011-11-13
SRR3641425,510,0691G692.5Mb2011-11-13

ID:
122632

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